{"id":367,"date":"2020-07-09T17:50:36","date_gmt":"2020-07-09T17:50:36","guid":{"rendered":"http:\/\/sites.rutgers.edu\/astrof-lab\/?page_id=367"},"modified":"2023-07-12T20:19:05","modified_gmt":"2023-07-12T20:19:05","slug":"resources","status":"publish","type":"page","link":"https:\/\/sites.rutgers.edu\/astrof-lab\/resources\/","title":{"rendered":"Resources"},"content":{"rendered":"

Mechanobiology:<\/strong><\/h4>\n
Defining Mechanobiology<\/a><\/h6>\n

 <\/p>\n

Single-cell RNAseq analysis courses:<\/strong><\/h4>\n

UC Davis Bioinformatics Core Training (R, Bioinformatics, and tutorials)<\/a> – this is a great primary resource to learn basics of R, bioinformatic and scRNAseq analysis (training courses from Github page<\/a>)<\/p>\n

Monocle 3 scRNAseq analysis including trajectory analysis<\/a> – they have a great tutorial on how to use this software<\/p>\n

Bioinformatics Training<\/a><\/p>\n

Single-cell RNA-seq data analysis workshop<\/a><\/p>\n

Theis lab tutorial<\/a><\/p>\n

Seurat Tutorial<\/a><\/p>\n

Swarup lab tutorial\u00a0<\/a><\/p>\n

Multiple Topics (microscopy, bioinformatics, etc.) from iBiology.org<\/a><\/p>\n

-iBiology.org Playlists<\/a><\/p>\n

 <\/p>\n

Genomic Resources<\/strong><\/h4>\n

Genome Browser<\/strong> \u00a0http:\/\/genome.ucsc.edu\/<\/a><\/p>\n

Expasy<\/strong>\u00a0https:\/\/www.expasy.org\/<\/a><\/p>\n

Protein Motif Search<\/strong> http:\/\/smart.embl-heidelberg.de\/<\/a><\/p>\n

Primer Design Tool\u00a0<\/strong>https:\/\/www.ncbi.nlm.nih.gov\/tools\/primer-blast\/<\/a><\/p>\n

Gene Set Enrichment Analysis<\/strong> http:\/\/metascape.org\/gp\/index.html#\/main\/step1<\/a><\/p>\n

Embryo Data for Lethal Genes\u00a0<\/strong>https:\/\/www.mousephenotype.org\/data\/embryo_imaging<\/a><\/p>\n

Enhancer Atlas<\/strong>\u00a0http:\/\/www.enhanceratlas.org\/<\/a><\/p>\n

 <\/p>\n

CRISPR
\n<\/strong><\/h4>\n

Guide RNA design tools<\/strong> https:\/\/cm.jefferson.edu\/Off-Spotter\/<\/a><\/p>\n

 <\/p>\n

Microscopy<\/strong><\/h4>\n

Interactive tool for 3D data visualization <\/strong>F<\/a>luoRender<\/a><\/p>\n

NEUBIAS <\/strong>NEUBIAS Academy<\/a><\/p>\n

FOCAL PLANE <\/strong>Where Biology Meets Microscopy<\/a><\/p>\n

PIVlab – <\/strong>Digital Particle Image Velocimetry Tool for Matlab<\/a><\/p>\n

 <\/p>\n

Tissue Clearing<\/strong><\/h4>\n

iDisco<\/strong>\u00a0https:\/\/idisco.info\/<\/a><\/p>\n

 <\/p>\n

Miscellaneous<\/b><\/h4>\n

Mechanobiology<\/strong>\u00a0https:\/\/www.mechanobio.info\/<\/a><\/p>\n

Fluorescent Protein Database<\/strong> https:\/\/www.fpbase.org\/<\/a><\/p>\n

North American Vascular Biology Organization<\/strong>\u00a0https:\/\/www.navbo.org\/<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"

Mechanobiology: Defining Mechanobiology   Single-cell RNAseq analysis courses: UC Davis Bioinformatics Core Training (R, Bioinformatics, and tutorials) – this is a great primary resource to learn basics of R, bioinformatic … Read More<\/a><\/p>\n","protected":false},"author":21,"featured_media":413,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-367","page","type-page","status-publish","has-post-thumbnail","hentry"],"acf":[],"_links":{"self":[{"href":"https:\/\/sites.rutgers.edu\/astrof-lab\/wp-json\/wp\/v2\/pages\/367"}],"collection":[{"href":"https:\/\/sites.rutgers.edu\/astrof-lab\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/sites.rutgers.edu\/astrof-lab\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/sites.rutgers.edu\/astrof-lab\/wp-json\/wp\/v2\/users\/21"}],"replies":[{"embeddable":true,"href":"https:\/\/sites.rutgers.edu\/astrof-lab\/wp-json\/wp\/v2\/comments?post=367"}],"version-history":[{"count":46,"href":"https:\/\/sites.rutgers.edu\/astrof-lab\/wp-json\/wp\/v2\/pages\/367\/revisions"}],"predecessor-version":[{"id":1188,"href":"https:\/\/sites.rutgers.edu\/astrof-lab\/wp-json\/wp\/v2\/pages\/367\/revisions\/1188"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/sites.rutgers.edu\/astrof-lab\/wp-json\/wp\/v2\/media\/413"}],"wp:attachment":[{"href":"https:\/\/sites.rutgers.edu\/astrof-lab\/wp-json\/wp\/v2\/media?parent=367"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}