Publications
Direct link to My Bibliography (NIH/National Library of Medicine)
2025
- Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank. Burley SK, Bhatt R, Bhikadiya C, Bi C, Biester A, Biswas P, Bittrich S, Blaumann S, Brown R, Chao H, Chithari VR, Craig PA, Crichlow GV, Duarte JM, Dutta S, Feng Z, Flatt JW, Ghosh S, Goodsell DS, Green RK, Guranovic V, Henry J, Hudson BP, Joy M, Kaelber JT, Khokhriakov I, Lai JS, Lawson CL, Liang Y, Myers-Turnbull D, Peisach E, Persikova I, Piehl DW, Pingale A, Rose Y, Sagendorf J, Sali A, Segura J, Sekharan M, Shao C, Smith J, Trumbull M, Vallat B, Voigt M, Webb B, Whetstone S, Wu-Wu A, Xing T, Young JY, Zalevsky A, Zardecki C (2025) Nucleic acids research 53(D1): D564-D574 PMID: 39607707 EuropePMC: 39607707 DOI: 10.1093/nar/gkae1091
2024
- The Nucleic Acid Knowledgebase: a new portal for 3D structural information about nucleic acids. Lawson CL, Berman HM, Chen L, Vallat B, Zirbel CL (2024) Nucleic acids research 52(D1): D245-D254 PMID: 37953312 EuropePMC: 37953312 DOI: 10.1093/nar/gkad957
- Making fluorescence-based integrative structures and associated kinetic information accessible. Hanke CA, Westbrook JD, Webb BM, Peulen TO, Lawson CL, Sali A, Berman HM, Seidel CAM, Vallat B (2024) Nature methods 21(11): 1970-1972 PMID: 39349602 EuropePMC: 39349602 DOI: 10.1038/s41592-024-02428-x
- Outcomes of the EMDataResource cryo-EM Ligand Modeling Challenge. Lawson CL, Kryshtafovych A, Pintilie GD, Burley SK, Černý J, Chen VB, Emsley P, Gobbi A, Joachimiak A, Noreng S, Prisant MG, Read RJ, Richardson JS, Rohou AL, Schneider B, Sellers BD, Shao C, Sourial E, Williams CI, Williams CJ, Yang Y, Abbaraju V, Afonine PV, Baker ML, Bond PS, Blundell TL, Burnley T, Campbell A, Cao R, Cheng J, Chojnowski G, Cowtan KD, DiMaio F, Esmaeeli R, Giri N, Grubmüller H, Hoh SW, Hou J, Hryc CF, Hunte C, Igaev M, Joseph AP, Kao WC, Kihara D, Kumar D, Lang L, Lin S, Maddhuri Venkata Subramaniya SR, Mittal S, Mondal A, Moriarty NW, Muenks A, Murshudov GN, Nicholls RA, Olek M, Palmer CM, Perez A, Pohjolainen E, Pothula KR, Rowley CN, Sarkar D, Schäfer LU, Schlicksup CJ, Schröder GF, Shekhar M, Si D, Singharoy A, Sobolev OV, Terashi G, Vaiana AC, Vedithi SC, Verburgt J, Wang X, Warshamanage R, Winn MD, Weyand S, Yamashita K, Zhao M, Schmid MF, Berman HM, Chiu W (2024) Nature methods 21(7): 1340-1348 PMID: 38918604 EuropePMC: 38918604 DOI: 10.1038/s41592-024-02321-7
- IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods. Vallat B, Webb BM, Westbrook JD, Goddard TD, Hanke CA, Graziadei A, Peisach E, Zalevsky A, Sagendorf J, Tangmunarunkit H, Voinea S, Sekharan M, Yu J, Bonvin AAMJJ, DiMaio F, Hummer G, Meiler J, Tajkhorshid E, Ferrin TE, Lawson CL, Leitner A, Rappsilber J, Seidel CAM, Jeffries CM, Burley SK, Hoch JC, Kurisu G, Morris K, Patwardhan A, Velankar S, Schwede T, Trewhella J, Kesselman C, Berman HM, Sali A (2024) Journal of molecular biology 436(17): 168546 PMID: 38508301 EuropePMC: 38508301 DOI: 10.1016/j.jmb.2024.168546
- Community recommendations on cryoEM data archiving and validation. Kleywegt GJ, Adams PD, Butcher SJ, Lawson CL, Rohou A, Rosenthal PB, Subramaniam S, Topf M, Abbott S, Baldwin PR, Berrisford JM, Bricogne G, Choudhary P, Croll TI, Danev R, Ganesan SJ, Grant T, Gutmanas A, Henderson R, Heymann JB, Huiskonen JT, Istrate A, Kato T, Lander GC, Lok SM, Ludtke SJ, Murshudov GN, Pye R, Pintilie GD, Richardson JS, Sachse C, Salih O, Scheres SHW, Schroeder GF, Sorzano COS, Stagg SM, Wang Z, Warshamanage R, Westbrook JD, Winn MD, Young JY, Burley SK, Hoch JC, Kurisu G, Morris K, Patwardhan A, Velankar S (2024) IUCrJ 11(Pt 2): 140-151 PMID: 38358351 EuropePMC: 38358351 DOI: 10.1107/S2052252524001246
2023
- RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chao H, Chen L, Craig PA, Crichlow GV, Dalenberg K, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan S, Ghosh S, Goodsell DS, Green RK, Guranovic V, Henry J, Hudson BP, Khokhriakov I, Lawson CL, Liang Y, Lowe R, Peisach E, Persikova I, Piehl DW, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Vallat B, Voigt M, Webb B, Westbrook JD, Whetstone S, Young JY, Zalevsky A, Zardecki C (2023) Nucleic acids research 51(D1): D488-D508 PMID: 36420884 EuropePMC: 36420884 DOI: 10.1093/nar/gkac1077
2022
- Electron microscopy holdings of the Protein Data Bank: the impact of the resolution revolution, new validation tools, and implications for the future. Burley SK, Berman HM, Chiu W, Dai W, Flatt JW, Hudson BP, Kaelber JT, Khare SD, Kulczyk AW, Lawson CL, Pintilie GD, Sali A, Vallat B, Westbrook JD, Young JY, Zardecki C (2022) Biophysical reviews 14(6): 1281-1301 PMID: 36474933 EuropePMC: 36474933 DOI: 10.1007/s12551-022-01013-w
- RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chao H, Chen L, Craig PA, Crichlow GV, Dalenberg K, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan SJ, Ghosh S, Goodsell DS, Green RK, Guranovic V, Henry J, Hudson BP, Khokhriakov I, Lawson CL, Liang Y, Lowe R, Peisach E, Persikova I, Piehl DW, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Vallat B, Voigt M, Webb B, Westbrook JD, Whetstone S, Young JY, Zalevsky A, Zardecki C (2022) Protein science : a publication of the Protein Society 31(12): e4482 PMID: 36281733 EuropePMC: 36281733 DOI: 10.1002/pro.4482
- PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology. Westbrook JD, Young JY, Shao C, Feng Z, Guranovic V, Lawson CL, Vallat B, Adams PD, Berrisford JM, Bricogne G, Diederichs K, Joosten RP, Keller P, Moriarty NW, Sobolev OV, Velankar S, Vonrhein C, Waterman DG, Kurisu G, Berman HM, Burley SK, Peisach E (2022) Journal of molecular biology 434(11): 167599 PMID: 35460671 EuropePMC: 35460671 DOI: 10.1016/j.jmb.2022.167599
- Developing Community Resources for Nucleic Acid Structures. Berman HM, Lawson CL, Schneider B (2022) Life (Basel, Switzerland) 12(4) PMID: 35455031 EuropePMC: 35455031 DOI: 10.3390/life12040540
- RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan SJ, Goodsell DS, Ghosh S, Kramer Green R, Guranovic V, Henry J, Hudson BP, Lawson CL, Liang Y, Lowe R, Peisach E, Persikova I, Piehl DW, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Vallat B, Voigt M, Westbrook JD, Whetstone S, Young JY, Zardecki C (2022) Protein science : a publication of the Protein Society 31(1): 187-208 PMID: 34676613 EuropePMC: 34676613 DOI: 10.1002/pro.4213
2021
- New system for archiving integrative structures. Vallat B, Webb B, Fayazi M, Voinea S, Tangmunarunkit H, Ganesan SJ, Lawson CL, Westbrook JD, Kesselman C, Sali A, Berman HM (2021) Acta crystallographica. Section D, Structural biology 77(Pt 12): 1486-1496 PMID: 34866606 EuropePMC: 34866606 DOI: 10.1107/S2059798321010871
- Crystal structures of Val58Ile tryptophan repressor in a domain-swapped array in the presence and absence of L-tryptophan. Sprenger J, Lawson CL, von Wachenfeldt C, Lo Leggio L, Carey J (2021) Acta crystallographica. Section F, Structural biology communications 77(Pt 7): 215-225 PMID: 34196612 EuropePMC: 34196612 DOI: 10.1107/S2053230X21006142
- Guest-protein incorporation into solvent channels of a protein host crystal (hostal). Sprenger J, Carey J, Schulz A, Drouard F, Lawson CL, von Wachenfeldt C, Linse S, Lo Leggio L (2021) Acta crystallographica. Section D, Structural biology 77(Pt 4): 471-485 PMID: 33825708 EuropePMC: 33825708 DOI: 10.1107/S2059798321001078
- Evolution of standardization and dissemination of cryo-EM structures and data jointly by the community, PDB, and EMDB. Chiu W, Schmid MF, Pintilie GD, Lawson CL (2021) The Journal of biological chemistry 296: 100560 PMID: 33744287 EuropePMC: 33744287 DOI: 10.1016/j.jbc.2021.100560
- Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Lawson CL, Kryshtafovych A, Adams PD, Afonine PV, Baker ML, Barad BA, Bond P, Burnley T, Cao R, Cheng J, Chojnowski G, Cowtan K, Dill KA, DiMaio F, Farrell DP, Fraser JS, Herzik MA Jr, Hoh SW, Hou J, Hung LW, Igaev M, Joseph AP, Kihara D, Kumar D, Mittal S, Monastyrskyy B, Olek M, Palmer CM, Patwardhan A, Perez A, Pfab J, Pintilie GD, Richardson JS, Rosenthal PB, Sarkar D, Schäfer LU, Schmid MF, Schröder GF, Shekhar M, Si D, Singharoy A, Terashi G, Terwilliger TC, Vaiana A, Wang L, Wang Z, Wankowicz SA, Williams CJ, Winn M, Wu T, Yu X, Zhang K, Berman HM, Chiu W (2021) Nature methods 18(2): 156-164 PMID: 33542514 EuropePMC: 33542514 DOI: 10.1038/s41592-020-01051-w
- RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Christie CH, Dalenberg K, Di Costanzo L, Duarte JM, Dutta S, Feng Z, Ganesan S, Goodsell DS, Ghosh S, Green RK, Guranović V, Guzenko D, Hudson BP, Lawson CL, Liang Y, Lowe R, Namkoong H, Peisach E, Persikova I, Randle C, Rose A, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Tao YP, Voigt M, Westbrook JD, Young JY, Zardecki C, Zhuravleva M (2021) Nucleic acids research 49(D1): D437-D451 PMID: 33211854 EuropePMC: 33211854 DOI: 10.1093/nar/gkaa1038
2020
- The RNA Polymerase α Subunit Recognizes the DNA Shape of the Upstream Promoter Element. Lara-Gonzalez S, Dantas Machado AC, Rao S, Napoli AA, Birktoft J, Di Felice R, Rohs R, Lawson CL (2020) Biochemistry 59(48): 4523-4532 PMID: 33205945 EuropePMC: 33205945 DOI: 10.1021/acs.biochem.0c00571
- The data universe of structural biology. Berman HM, Vallat B, Lawson CL (2020) IUCrJ 7(Pt 4): 630-638 PMID: 32695409 EuropePMC: 32695409 DOI: 10.1107/S205225252000562X
- Evolving data standards for cryo-EM structures. Lawson CL, Berman HM, Chiu W (2020) Structural dynamics (Melville, N.Y.) 7(1): 014701 PMID: 32002441 EuropePMC: 32002441 DOI: 10.1063/1.5138589
2019
- Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. Berman HM, Adams PD, Bonvin AA, Burley SK, Carragher B, Chiu W, DiMaio F, Ferrin TE, Gabanyi MJ, Goddard TD, Griffin PR, Haas J, Hanke CA, Hoch JC, Hummer G, Kurisu G, Lawson CL, Leitner A, Markley JL, Meiler J, Montelione GT, Phillips GN Jr, Prisner T, Rappsilber J, Schriemer DC, Schwede T, Seidel CAM, Strutzenberg TS, Svergun DI, Tajkhorshid E, Trewhella J, Vallat B, Velankar S, Vuister GW, Webb B, Westbrook JD, White KL, Sali A (2019) Structure (London, England : 1993) 27(12): 1745-1759 PMID: 31780431 EuropePMC: 31780431 DOI: 10.1016/j.str.2019.11.002
2018
- Comparing cryo-EM structures. Lawson CL, Chiu W (2018) Journal of structural biology 204(3): 523-526 PMID: 30321594 EuropePMC: 30321594 DOI: 10.1016/j.jsb.2018.10.004
- Distribution of evaluation scores for the models submitted to the second cryo-EM model challenge. Kryshtafovych A, Monastyrskyy B, Adams PD, Lawson CL, Chiu W (2018) Data in brief 20: 1629-1638 PMID: 30263915 EuropePMC: 30263915 DOI: 10.1016/j.dib.2018.08.214
- Evaluation system and web infrastructure for the second cryo-EM model challenge. Kryshtafovych A, Adams PD, Lawson CL, Chiu W (2018) Journal of structural biology 204(1): 96-108 PMID: 30017700 EuropePMC: 30017700 DOI: 10.1016/j.jsb.2018.07.006
- Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, Chen M, Clark AR, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Ikegawa Y, Kengaku Y, Lawson CL, Liang Y, Mak L, Mukhopadhyay A, Narayanan B, Nishiyama K, Patwardhan A, Sahni G, Sanz-García E, Sato J, Sekharan MR, Shao C, Smart OS, Tan L, van Ginkel G, Yang H, Zhuravleva MA, Markley JL, Nakamura H, Kurisu G, Kleywegt GJ, Velankar S, Berman HM, Burley SK (2018) Database : the journal of biological databases and curation 2018 PMID: 29688351 EuropePMC: 29688351 DOI: 10.1093/database/bay002
- Anticipating innovations in structural biology. Berman HM, Lawson CL, Vallat B, Gabanyi MJ (2018) Quarterly reviews of biophysics 51: e8 PMID: 30912485 EuropePMC: 30912485 DOI: 10.1017/S0033583518000057
2017
- Validation of Structures in the Protein Data Bank. Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Peisach E, Sahni G, Sekharan MR, Sen S, Shao C, Smart OS, Ulrich EL, Yamashita R, Quesada M, Young JY, Nakamura H, Markley JL, Berman HM, Burley SK, Velankar S, Kleywegt GJ (2017) Structure (London, England : 1993) 25(12): 1916-1927 PMID: 29174494 EuropePMC: 29174494 DOI: 10.1016/j.str.2017.10.009
- Building bridges between cellular and molecular structural biology. Patwardhan A, Brandt R, Butcher SJ, Collinson L, Gault D, Grünewald K, Hecksel C, Huiskonen JT, Iudin A, Jones ML, Korir PK, Koster AJ, Lagerstedt I, Lawson CL, Mastronarde D, McCormick M, Parkinson H, Rosenthal PB, Saalfeld S, Saibil HR, Sarntivijai S, Solanes Valero I, Subramaniam S, Swedlow JR, Tudose I, Winn M, Kleywegt GJ (2017) eLife 6 PMID: 28682240 EuropePMC: 28682240 DOI: 10.7554/eLife.25835
- OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley SK (2017) Structure (London, England : 1993) 25(3): 536-545 PMID: 28190782 EuropePMC: 28190782 DOI: 10.1016/j.str.2017.01.004
2016
- Databases and Archiving for CryoEM. Patwardhan A, Lawson CL (2016) Methods in enzymology 579: 393-412 PMID: 27572735 EuropePMC: 27572735 DOI: 10.1016/bs.mie.2016.04.015
- EMDataBank unified data resource for 3DEM. Lawson CL, Patwardhan A, Baker ML, Hryc C, Garcia ES, Hudson BP, Lagerstedt I, Ludtke SJ, Pintilie G, Sala R, Westbrook JD, Berman HM, Kleywegt GJ, Chiu W (2016) Nucleic acids research 44(D1): D396-403 PMID: 26578576 EuropePMC: 26578576 DOI: 10.1093/nar/gkv1126
2015
- Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD (2015) Structure (London, England : 1993) 23(7): 1156-67 PMID: 26095030 EuropePMC: 26095030 DOI: 10.1016/j.str.2015.05.013
2014
- A 3D cellular context for the macromolecular world. Patwardhan A, Ashton A, Brandt R, Butcher S, Carzaniga R, Chiu W, Collinson L, Doux P, Duke E, Ellisman MH, Franken E, Grünewald K, Heriche JK, Koster A, Kühlbrandt W, Lagerstedt I, Larabell C, Lawson CL, Saibil HR, Sanz-García E, Subramaniam S, Verkade P, Swedlow JR, Kleywegt GJ (2014) Nature structural & molecular biology 21(10): 841-5 PMID: 25289590 EuropePMC: 25289590 DOI: 10.1038/nsmb.2897
- Structure of catabolite activator protein with cobalt(II) and sulfate. Rao RR, Lawson CL (2014) Acta crystallographica. Section F, Structural biology communications 70(Pt 5): 560-3 PMID: 24817710 EuropePMC: 24817710 DOI: 10.1107/S2053230X14005366
2013
- Trendspotting in the Protein Data Bank. Berman HM, Coimbatore Narayanan B, Di Costanzo L, Dutta S, Ghosh S, Hudson BP, Lawson CL, Peisach E, Prlić A, Rose PW, Shao C, Yang H, Young J, Zardecki C (2013) FEBS letters 587(8): 1036-45 PMID: 23337870 EuropePMC: 23337870 DOI: 10.1016/j.febslet.2012.12.029
2012
- Data management challenges in three-dimensional EM. Patwardhan A, Carazo JM, Carragher B, Henderson R, Heymann JB, Hill E, Jensen GJ, Lagerstedt I, Lawson CL, Ludtke SJ, Mastronarde D, Moore WJ, Roseman A, Rosenthal P, Sorzano CO, Sanz-García E, Scheres SH, Subramaniam S, Westbrook J, Winn M, Swedlow JR, Kleywegt GJ (2012) Nature structural & molecular biology 19(12): 1203-7 PMID: 23211764 EuropePMC: 23211764 DOI: 10.1038/nsmb.2426
- The 2010 cryo-EM modeling challenge. Ludtke SJ, Lawson CL, Kleywegt GJ, Berman H, Chiu W (2012) Biopolymers 97(9): 651-4 PMID: 22696402 EuropePMC: 22696402 DOI: 10.1002/bip.22081
- Outcome of the first electron microscopy validation task force meeting. Henderson R, Sali A, Baker ML, Carragher B, Devkota B, Downing KH, Egelman EH, Feng Z, Frank J, Grigorieff N, Jiang W, Ludtke SJ, Medalia O, Penczek PA, Rosenthal PB, Rossmann MG, Schmid MF, Schröder GF, Steven AC, Stokes DL, Westbrook JD, Wriggers W, Yang H, Young J, Berman HM, Chiu W, Kleywegt GJ, Lawson CL (2012) Structure (London, England : 1993) 20(2): 205-14 PMID: 22325770 EuropePMC: 22325770 DOI: 10.1016/j.str.2011.12.014
- Environment-dependent long-range structural distortion in a temperature-sensitive point mutant. Carey J, Benoff B, Harish B, Yuan L, Lawson CL (2012) Protein science : a publication of the Protein Society 21(1): 63-74 PMID: 22057811 EuropePMC: 22057811 DOI: 10.1002/pro.759
2011
- Workshop on the validation and modeling of electron cryo-microscopy structures of biological nanomachines. Ludtke SJ, Lawson CL, Kleywegt GJ, Berman HM, Chiu W (2011) Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing: 369-73 PMID: 21121065 EuropePMC: 21121065 DOI: 10.1142/9789814335058_0039
- EMDataBank.org: unified data resource for CryoEM. Lawson CL, Baker ML, Best C, Bi C, Dougherty M, Feng P, van Ginkel G, Devkota B, Lagerstedt I, Ludtke SJ, Newman RH, Oldfield TJ, Rees I, Sahni G, Sala R, Velankar S, Warren J, Westbrook JD, Henrick K, Kleywegt GJ, Berman HM, Chiu W (2011) Nucleic acids research 39(Database issue): D456-64 PMID: 20935055 EuropePMC: 20935055 DOI: 10.1093/nar/gkq880
2010
- Unified data resource for cryo-EM. Lawson CL (2010) Methods in enzymology 483: 73-90 PMID: 20888470 EuropePMC: 20888470 DOI: 10.1016/S0076-6879(10)83004-6
- Structure of the Escherichia coli RNA polymerase alpha subunit C-terminal domain. Lara-González S, Birktoft JJ, Lawson CL (2010) Acta crystallographica. Section D, Biological crystallography 66(Pt 7): 806-12 PMID: 20606261 EuropePMC: 20606261 DOI: 10.1107/S0907444910018470
2009
- Three-dimensional EM structure of an intact activator-dependent transcription initiation complex. Hudson BP, Quispe J, Lara-González S, Kim Y, Berman HM, Arnold E, Ebright RH, Lawson CL (2009) Proceedings of the National Academy of Sciences of the United States of America 106(47): 19830-5 PMID: 19903881 EuropePMC: 19903881 DOI: 10.1073/pnas.0908782106
- Signatures of protein-DNA recognition in free DNA binding sites. Locasale JW, Napoli AA, Chen S, Berman HM, Lawson CL (2009) Journal of molecular biology 386(4): 1054-65 PMID: 19244617 EuropePMC: 19244617 DOI: 10.1016/j.jmb.2009.01.007
2008
- Representation of viruses in the remediated PDB archive. Lawson CL, Dutta S, Westbrook JD, Henrick K, Berman HM (2008) Acta crystallographica. Section D, Biological crystallography D64(Pt 8): 874-82 PMID: 18645236 EuropePMC: 18645236 DOI: 10.1107/S0907444908017393
- Remediation of the protein data bank archive. Henrick K, Feng Z, Bluhm WF, Dimitropoulos D, Doreleijers JF, Dutta S, Flippen-Anderson JL, Ionides J, Kamada C, Krissinel E, Lawson CL, Markley JL, Nakamura H, Newman R, Shimizu Y, Swaminathan J, Velankar S, Ory J, Ulrich EL, Vranken W, Westbrook J, Yamashita R, Yang H, Young J, Yousufuddin M, Berman HM (2008) Nucleic acids research 36(Database issue): D426-33 PMID: 18073189 EuropePMC: 18073189 DOI: 10.1093/nar/gkm937
2006
- Crystal structure of neurotropism-associated variable surface protein 1 (Vsp1) of Borrelia turicatae. Lawson CL, Yung BH, Barbour AG, Zückert WR (2006) Journal of bacteriology 188(12): 4522-30 PMID: 16740958 EuropePMC: 16740958 DOI: 10.1128/JB.00028-06
- Residual brain infection in relapsing-fever borreliosis. Cadavid D, Sondey M, Garcia E, Lawson CL (2006) The Journal of infectious diseases 193(10): 1451-8 PMID: 16619194 EuropePMC: 16619194 DOI: 10.1086/503367
- Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: recognition of pyrimidine-purine and purine-purine steps. Napoli AA, Lawson CL, Ebright RH, Berman HM (2006) Journal of molecular biology 357(1): 173-83 PMID: 16427082 EuropePMC: 16427082 DOI: 10.1016/j.jmb.2005.12.051
2005
- Structural investigation of Borrelia burgdorferi OspB, a bactericidal Fab target. Becker M, Bunikis J, Lade BD, Dunn JJ, Barbour AG, Lawson CL (2005) The Journal of biological chemistry 280(17): 17363-70 PMID: 15713683 EuropePMC: 15713683 DOI: 10.1074/jbc.M412842200
- Design of a data model for developing laboratory information management and analysis systems for protein production. Pajon A, Ionides J, Diprose J, Fillon J, Fogh R, Ashton AW, Berman H, Boucher W, Cygler M, Deleury E, Esnouf R, Janin J, Kim R, Krimm I, Lawson CL, Oeuillet E, Poupon A, Raymond S, Stevens T, van Tilbeurgh H, Westbrook J, Wood P, Ulrich E, Vranken W, Xueli L, Laue E, Stuart DI, Henrick K (2005) Proteins 58(2): 278-84 PMID: 15562521 EuropePMC: 15562521 DOI: 10.1002/prot.20303
2004
- A structure-based method for identifying DNA-binding proteins and their sites of DNA-interaction. McLaughlin WA, Kulp DW, de la Cruz J, Lu XJ, Lawson CL, Berman HM (2004) Journal of structural and functional genomics 5(4): 255-65 PMID: 15704013 EuropePMC: 15704013 DOI: 10.1007/s10969-005-4902-1
- E. coli trp repressor forms a domain-swapped array in aqueous alcohol. Lawson CL, Benoff B, Berger T, Berman HM, Carey J (2004) Structure (London, England : 1993) 12(6): 1099-108 PMID: 15274929 EuropePMC: 15274929 DOI: 10.1016/j.str.2004.03.019
- Biophysical characterization of natural and mutant fluorescent proteins cloned from zooxanthellate corals. Sun Y, Castner EW Jr, Lawson CL, Falkowski PG (2004) FEBS letters 570(1-3): 175-83 PMID: 15251461 EuropePMC: 15251461 DOI: 10.1016/j.febslet.2004.06.043
- Catabolite activator protein: DNA binding and transcription activation. Lawson CL, Swigon D, Murakami KS, Darst SA, Berman HM, Ebright RH (2004) Current opinion in structural biology 14(1): 10-20 PMID: 15102444 EuropePMC: 15102444 DOI: 10.1016/j.sbi.2004.01.012
2003
- Crystals of trp repressor suitable for high-resolution neutron Laue diffraction studies. Daniels BV, Myles DA, Forsyth VT, Lawson CL (2003) Acta crystallographica. Section D, Biological crystallography 59(Pt 1): 136-8 PMID: 12499549 EuropePMC: 12499549 DOI: 10.1107/s0907444902018516
2002
- Structural basis of transcription activation: the CAP-alpha CTD-DNA complex. Benoff B, Yang H, Lawson CL, Parkinson G, Liu J, Blatter E, Ebright YW, Berman HM, Ebright RH (2002) Science (New York, N.Y.) 297(5586): 1562-6 PMID: 12202833 EuropePMC: 12202833 DOI: 10.1126/science.1076376
- Approaches toward the directed design of a vaccine against Borrelia burgdorferi. Luft BJ, Dunn JJ, Lawson CL (2002) The Journal of infectious diseases 185 Suppl 1: S46-51 PMID: 11865439 EuropePMC: 11865439 DOI: 10.1086/338463
2001
- Crystal structure of outer surface protein C (OspC) from the Lyme disease spirochete, Borrelia burgdorferi. Kumaran D, Eswaramoorthy S, Luft BJ, Koide S, Dunn JJ, Lawson CL, Swaminathan S (2001) The EMBO journal 20(5): 971-8 PMID: 11230121 EuropePMC: 11230121 DOI: 10.1093/emboj/20.5.971
- Structural conservation of neurotropism-associated VspA within the variable Borrelia Vsp-OspC lipoprotein family. Zuckert WR, Kerentseva TA, Lawson CL, Barbour AG (2001) The Journal of biological chemistry 276(1): 457-63 PMID: 11018048 EuropePMC: 11018048 DOI: 10.1074/jbc.M008449200
2000
- Structural identification of a key protective B-cell epitope in Lyme disease antigen OspA. Ding W, Huang X, Yang X, Dunn JJ, Luft BJ, Koide S, Lawson CL (2000) Journal of molecular biology 302(5): 1153-64 PMID: 11183781 EuropePMC: 11183781 DOI: 10.1006/jmbi.2000.4119
1999
- Model for lentivirus capsid core assembly based on crystal dimers of EIAV p26. Jin Z, Jin L, Peterson DL, Lawson CL (1999) Journal of molecular biology 286(1): 83-93 PMID: 9931251 EuropePMC: 9931251 DOI: 10.1006/jmbi.1998.2443
1997
- Crystal structure of Lyme disease antigen outer surface protein A complexed with an Fab. Li H, Dunn JJ, Luft BJ, Lawson CL (1997) Proceedings of the National Academy of Sciences of the United States of America 94(8): 3584-9 PMID: 9108020 EuropePMC: 9108020 DOI: 10.1073/pnas.94.8.3584
1996
- An atomic view of the L-tryptophan binding site of trp repressor. Lawson CL (1996) Nature structural biology 3(12): 986-7 PMID: 8946848 EuropePMC: 8946848 DOI: 10.1038/nsb1296-986
1995
- Crystallization and preliminary X-ray analysis of Borrelia burgdorferi outer surface protein A (OspA) complexed with a murine monoclonal antibody Fab fragment. Li H, Lawson CL (1995) Journal of structural biology 115(3): 335-7 PMID: 8573475 EuropePMC: 8573475 DOI: 10.1006/jsbi.1995.1058
- A modified Crowther and Blow T1 translation function for partial search models. Lawson CL (1995) Acta crystallographica. Section D, Biological crystallography 51(Pt 5): 853-5 PMID: 15299826 EuropePMC: 15299826 DOI: 10.1107/S0907444995002265
- Site-directed mutations in tyrosine 195 of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 affect activity and product specificity. Penninga D, Strokopytov B, Rozeboom HJ, Lawson CL, Dijkstra BW, Bergsma J, Dijkhuizen L (1995) Biochemistry 34(10): 3368-76 PMID: 7880832 EuropePMC: 7880832 DOI: 10.1021/bi00010a028
1994
- The tryptophan repressor sequence is highly conserved among the Enterobacteriaceae. Arvidson DN, Arvidson CG, Lawson CL, Miner J, Adams C, Youderian P (1994) Nucleic acids research 22(10): 1821-9 PMID: 8208606 EuropePMC: 8208606 DOI: 10.1093/nar/22.10.1821
- Nucleotide sequence and X-ray structure of cyclodextrin glycosyltransferase from Bacillus circulans strain 251 in a maltose-dependent crystal form. Lawson CL, van Montfort R, Strokopytov B, Rozeboom HJ, Kalk KH, de Vries GE, Penninga D, Dijkhuizen L, Dijkstra BW (1994) Journal of molecular biology 236(2): 590-600 PMID: 8107143 EuropePMC: 8107143 DOI: 10.1006/jmbi.1994.1168
1993
- Cocrystals of Escherichia coli trp repressor bound to an alternative operator DNA sequence. Carey J, Combatti N, Lewis DE, Lawson CL (1993) Journal of molecular biology 234(2): 496-8 PMID: 8230229 EuropePMC: 8230229 DOI: 10.1006/jmbi.1993.1602
- Tandem binding in crystals of a trp repressor/operator half-site complex. Lawson CL, Carey J (1993) Nature 366(6451): 178-82 PMID: 8232559 EuropePMC: 8232559 DOI: 10.1038/366178a0
1990
- Maltodextrin-dependent crystallization of cyclomaltodextrin glucanotransferase from Bacillus circulans. Lawson CL, Bergsma J, Bruinenberg PM, de Vries G, Dijkhuizen L, Dijkstra BW (1990) Journal of molecular biology 214(4): 807-9 PMID: 2143786 EuropePMC: 2143786 DOI: 10.1016/0022-2836(90)90335-J
1989
- Use of electron microscopy in the examination of lattice defects in crystals of alcohol oxidase. Van der Klei IJ, Lawson CL, Rozeboom H, Dijkstra BW, Veenhuis M, Harder W, Hol WG (1989) FEBS letters 244(1): 213-6 PMID: 2494064 EuropePMC: 2494064 DOI: 10.1016/0014-5793(89)81195-0
1988
- Crystal structure of trp repressor/operator complex at atomic resolution. Otwinowski Z, Schevitz RW, Zhang RG, Lawson CL, Joachimiak A, Marmorstein RQ, Luisi BF, Sigler PB (1988) Nature 335(6188): 321-9 PMID: 3419502 EuropePMC: 3419502 DOI: 10.1038/335321a0
- The structure of trp pseudorepressor at 1.65A shows why indole propionate acts as a trp ‘inducer’. Lawson CL, Sigler PB (1988) Nature 333(6176): 869-71 PMID: 3290685 EuropePMC: 3290685 DOI: 10.1038/333869a0
- Flexibility of the DNA-binding domains of trp repressor. Lawson CL, Zhang RG, Schevitz RW, Otwinowski Z, Joachimiak A, Sigler PB (1988) Proteins 3(1): 18-31 PMID: 3375234 EuropePMC: 3375234 DOI: 10.1002/prot.340030103
1987
- The crystal structure of trp aporepressor at 1.8 A shows how binding tryptophan enhances DNA affinity. Zhang RG, Joachimiak A, Lawson CL, Schevitz RW, Otwinowski Z, Sigler PB (1987) Nature 327(6123): 591-7 PMID: 3600756 EuropePMC: 3600756 DOI: 10.1038/327591a0
1985
- The three-dimensional structure of trp repressor. Schevitz RW, Otwinowski Z, Joachimiak A, Lawson CL, Sigler PB (1985) Nature 317(6040): 782-6 PMID: 3903514 EuropePMC: 3903514 DOI: 10.1038/317782a0