{"id":363,"date":"2020-07-09T16:51:59","date_gmt":"2020-07-09T16:51:59","guid":{"rendered":"http:\/\/sites.rutgers.edu\/desmond-lun\/?page_id=363"},"modified":"2026-03-10T13:37:18","modified_gmt":"2026-03-10T13:37:18","slug":"publications","status":"publish","type":"page","link":"https:\/\/sites.rutgers.edu\/desmond-lun\/publications\/","title":{"rendered":"Publications"},"content":{"rendered":"<ul>\n<li><a href=\"https:\/\/scholar.google.com\/citations?user=fLLgLRMAAAAJ\">Google Scholar<\/a><\/li>\n<\/ul>\n<h3>Books<\/h3>\n<ol>\n<li>T. Ho and D. S. Lun. <a href=\"https:\/\/books.google.com\/books?id=A8EnAAAACAAJ\"><em>Network Coding: An Introduction<\/em><\/a>. Cambridge University Press, Cambridge, 2008. [<a href=\"https:\/\/doi.org\/10.1093\/comjnl\/bxn057\">Review by Olav Geil<\/a>] [<a href=\"https:\/\/www.tup.tsinghua.edu.cn\/booksCenter\/book_06106301.html\">Chinese translation<\/a>] [<a href=\"https:\/\/www.tdupress.jp\/books\/isbn978-4-501-54830-8.html\">Japanese translation<\/a>]<\/li>\n<\/ol>\n<h3>Book chapters<\/h3>\n<ol>\n<li>A. Krishnan, X. Qian, G. Ananyev, D. S. Lun, and G. C. Dismukes. <a href=\"https:\/\/doi.org\/10.1007\/978-981-13-0854-3_8\">Rewiring of cyanobacterial metabolism for hydrogen production: Synthetic biology approaches and challenges<\/a>. In W. Zhang and X. Song, editors, <em>Synthetic Biology of Cyanobacteria<\/em>, pages 171-213. Springer, Singapore, 2018.<\/li>\n<li>F. Zhao, M. M\u00e9dard, D. Lun, and A. Ozdaglar. <a href=\"https:\/\/doi.org\/10.1007\/978-1-4419-0673-1_12\">Minimum-cost subgraph algorithms for static and dynamic multicasts with network coding<\/a>. In V. Tarokh, editor, <em>New Directions in Wireless Communications Research<\/em>, pages 317-349. Springer, Dordrecht, 2009.<\/li>\n<li>D. S. Lun, T. Ho, N. Ratnakar, M. M\u00e9dard, and R. Koetter. <a href=\"https:\/\/doi.org\/10.1007\/1-4020-4711-8_5\">Network coding in wireless networks<\/a>. In F. H. P. Fitzek and M. Katz, editors, <em>Cooperation in Wireless Networks: Principles and Applications<\/em>, pages 127-161. Springer, Dordrecht, 2006.<\/li>\n<\/ol>\n<h3>Journal articles<\/h3>\n<ol>\n<li>C. M. Grgicak, Q. Bhembe, K. Slooten, A. Khandelwal, K. R. Duffy, and D. S. Lun.  <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2026.103476\">Salience, legitimacy and credibility of single-cell sperm data and their evaluation<\/a>.  <em>Forensic Sci. Int. Genet.<\/em>, 84:103476, June 2026.<\/li>\n<li>Q. A. Bhembe, D. S. Lun, K. R. Duffy, and C. M. Grgicak.  <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2025.103369\">Salience, legitimacy, and credibility of two end-to-end forensic single cell probabilistic systems<\/a>.  <em>Forensic Sci. Int. Genet.<\/em>, 81:103369, February 2026.<\/li>\n<li>C. M. Grgicak, K. Slooten, R. G. Cowell, Q. Bhembe, D. S. Lun.  <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2024.103220\">The (in)dependence of single-cell data inferences on model constructs<\/a>.  <em>Forensic Sci. Int. Genet.<\/em>, 76:103220, March 2025.<\/li>\n<li>D. S. Lun and C. M. Grgicak. <a href=\"https:\/\/doi.org\/10.1109\/TCBB.2024.3416877\">Calculation of the Weight of Evidence for Combined Single-Cell and Extracellular Forensic DNA<\/a>.  <em>IEEE\/ACM Trans. Comput. Biol. Bioinform.<\/em>, 21(6):2587-2591, November-December 2024.<\/li>\n<li>M. Podkowik, A. I. Perault, G. Putzel, A. Pountain, J. Kim, A. Dumont, E. Zwack, R. J. Ulrich, T. K. Karagounis, C. Zhou, A. F. Haag, J. Shenderovich, G. A. Wasserman, J. Kwon, J. Chen, A. R. Richardson, J. N. Weiser, C. R. Nowosad, D. S. Lun, D. Parker, A. Pironti, X. Zhao, K. Drlica, I. Yanai, V. J. Torres, and B. Shopsin. <a href=\"https:\/\/doi.org\/10.7554\/eLife.89098.1\">Quorum-sensing <em>agr<\/em> system of <em>Staphylococcus aureus<\/em> primes gene expression for protection from lethal oxidative stress<\/a>. <em>eLife<\/em>, 12:RP89098, April 2024.<\/li>\n<li>C. M. Grgicak, Q. Bhembe, K. Slooten, N. C. Sheth, K. R. Duffy, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2023.103000\">Single-cell investigative genetics: Single-cell data produces genotype distributions concentrated at the true genotype across all mixture complexities<\/a>. <em>Forensic Sci. Int. Genet.<\/em>, 69:103000, March 2024.<\/li>\n<li>K. R. Duffy, D. S. Lun, M. M. Mulcahy, L. O&#8217;Donnell, N. Sheth, and C. M. Grgicak. <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2023.102852\">Evidentiary evaluation of single cells renders highly informative forensic comparisons across multifarious admixtures<\/a>. <em>Forensic Sci. Int. Genet.<\/em>, 64:102852, May 2023.<\/li>\n<li>C. M. Grgicak, K. R. Duffy, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2021.102563\">The a posteriori probability of the number of contributors when conditioned on an assumed contributor<\/a>. <em>Forensic Sci. Int. Genet.<\/em>, 54:102563, September 2021.<\/li>\n<li>J. Valtl, U. J. M\u00f6nich, D. S. Lun, J. Kelley, and C. M. Grgicak. <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2021.102556\">A series of developmental validation tests for number of contributors platforms: Exemplars using NOCIt and a neural network<\/a>. <em>Forensic Sci. Int. Genet.<\/em>, 54:102556, September 2021.<\/li>\n<li>S. Bhadra-Lobo, M. K. Kim, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1371\/journal.pone.0238689\">Assessment of transcriptomic constraint-based methods for central carbon flux inference<\/a>. <em>PLoS ONE<\/em>, 15(9):e0238689, September 2020.<\/li>\n<li>C. M. Grgicak, S. Karkar, X. Yearwood-Garcia, L. E. Alfonse, K. R. Duffy, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2020.102296\">A large-scale validation of NOCIt&#8217;s <em>a posteriori<\/em> probability of the number of contributors and its integration into forensic interpretation pipelines<\/a>. <em>Forensic Sci. Int. Genet.<\/em>, 47:102296, July 2020.<\/li>\n<li>S. Karkar, L. E. Alfonse, C. M. Grgicak, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1186\/s12859-019-3074-0\">Statistical modeling of STR capillary electrophoresis signal<\/a>. <em>BMC Bioinformatics<\/em>, 20:584, December 2019.<\/li>\n<li>H. Swaminathan, M. O. Qureshi, C. M. Grgicak, K. Duffy, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1371\/journal.pone.0207599\">Four model variants within a continuous forensic DNA mixture interpretation framework: Effects on evidential inference and reporting<\/a>. <em>PLoS ONE<\/em>, 13(11):e0207599, November 2018.<\/li>\n<li>X. Qian, Y. Zhang, D. S. Lun, and G. C. Dismukes. <a href=\"https:\/\/doi.org\/10.1021\/acssynbio.8b00116\">Rerouting of metabolism into desired cellular products by nutrient stress: Fluxes reveal the selected pathways in cyanobacterial photosynthesis<\/a>. <em>ACS Synth. Biol.<\/em>, 7(5):1465-1476, May 2018.<\/li>\n<li>S. Norsworthy, D. S. Lun, and C. M. Grgicak. <a href=\"https:\/\/doi.org\/10.1016\/j.legalmed.2018.02.001\">Determining the number of contributors to DNA mixtures in the low-template regime: Exploring the impacts of sampling and detection effects<\/a>. <em>Leg. Med.<\/em>, 32:1-8, May 2018.<\/li>\n<li>L. Harper, D. Balasubramanian, E. A. Ohneck, W. E. Sause, J. Chapman, B. Mejia-Sosa, T. Lhakhang, A. Heguy, A. Tsirigos, B. Ueberheide, J. M. Boyd, D. S. Lun, and V. J. Torres. <a href=\"https:\/\/doi.org\/10.1128\/mBio.02272-17\"><em>Staphylococcus aureus<\/em> responds to the central metabolite pyruvate to regulate virulence<\/a>. <em>mBio<\/em>, 9(1):e02272-17, January 2018.<\/li>\n<li>L. E. Alfonse, A. D. Garrett, D. S. Lun, K. R. Duffy, and C. M. Grgicak. <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2017.10.006\">A large-scale dataset of single and mixed-source short tandem repeat profiles to inform human identification strategies: PROVEDIt<\/a>. <em>Forensic Sci. Int. Genet.<\/em>, 32:62-70, January 2018.<\/li>\n<li>K. C. Peters, H. Swaminathan, J. Sheehan, K. R. Duffy, D. S. Lun, and C. M. Grgicak. <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2017.09.005\">Production of high-fidelity electropherograms results in improved and consistent DNA interpretation: Standardizing the forensic validation process<\/a>. <em>Forensic Sci. Int. Genet.<\/em>, 31:160-170, November 2017.<\/li>\n<li>J. Kim, C. M. Brown, M. K. Kim, E. H. Burrows, S. Bach, D. S. Lun, and P. G. Falkowski. <a href=\"https:\/\/doi.org\/10.1073\/pnas.1711642114\">Effect of cell cycle arrest on intermediate metabolism in the marine diatom <em>Phaeodactylum tricornutum<\/em><\/a>. <em>Proc. Natl. Acad. Sci. USA<\/em>, 114(38):E8007-E8016, October 2017.<\/li>\n<li>J. J. Kelley, S. Maor, M. K. Kim, A. Lane, D. S. Lun. <a href=\"https:\/\/doi.org\/10.1093\/bioinformatics\/btx240\">MOST-Visualization: Software for producing automated textbook-style maps of genome-scale metabolic networks<\/a>. <em>Bioinformatics<\/em>, 33(16):2596-2597, August 2017.<\/li>\n<li>J. Dinamarca, O. Levitan, G. K. Kumaraswamy, D. S. Lun, and P. G. Falkowski. <a href=\"https:\/\/doi.org\/10.1111\/jpy.12513\">Overexpression of a diacylglycerol acyltransferase gene in <em>Phaeodactylum tricornutum<\/em> directs carbon towards lipid biosynthesis<\/a>. <em>J. Phycology<\/em>, 53(2):405-414, April 2017.<\/li>\n<li>X. Qian, M. K. Kim, G. K. Kumaraswamy, A. Agarwal, D. S. Lun, and G. C. Dismukes. <a href=\"https:\/\/doi.org\/10.1016\/j.bbabio.2016.12.007\">Flux balance analysis of photoautotrophic metabolism: Uncovering new biological details of subsystems involved in cyanobacterial photosynthesis<\/a>. <em>BBA \u2013 Bioenergetics<\/em>, 1858(4):276-287, April 2017.<\/li>\n<li>L. E. Alfonse, G. Tejada, H. Swaminathan, D. S. Lun, and C. M. Grgicak. <a href=\"https:\/\/doi.org\/10.1111\/1556-4029.13284\">Inferring the number of contributors to complex DNA mixtures using three methods: Exploring the limits of low-template DNA interpretation<\/a>. <em>J. Forensic Sci.<\/em>, 62(2):308-316, March 2017.<\/li>\n<li>D. Balasubramanian, E. A. Ohneck, J. Chapman, A. Weiss, M. K. Kim, T. Reyes-Robles, J. Zhong, L. N. Shaw, D. S. Lun, B. Ueberheide, B. Shopsin, and V. J. Torres. <a href=\"https:\/\/doi.org\/10.1128\/mBio.00818-16\"><em>Staphylococcus aureus<\/em> coordinates leukocidin expression and pathogenesis by sensing metabolic fluxes via RpiRc<\/a>. <em>mBio<\/em>, 7(3):e00818-16, June 2016.<\/li>\n<li>M. K. Kim, A. Lane, J. J. Kelley, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1371\/journal.pone.0157101\">E-Flux2 and SPOT: Validated methods for inferring intracellular metabolic flux distributions from transcriptomic data<\/a>. <em>PLoS ONE<\/em>, 11(6):e0157101, June 2016.<\/li>\n<li>H. Swaminathan, A. Garg, C. M. Grgicak, M. Medard, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2016.02.005\">CEESIt: A computational tool for the interpretation of STR mixtures<\/a>. <em>Forensic Sci. Int. Genet.<\/em>, 22:149-160, May 2016.<\/li>\n<li>J. Kim, M. Fabris, G. Baart, M. K. Kim, A. Goossens, W. Vyverman, P. G. Falkowski, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1111\/tpj.13081\">Flux balance analysis of primary metabolism in the diatom <em>Phaeodactylum tricornutum<\/em><\/a>. <em>Plant J.<\/em>, 85(1):161-176, January 2016.<\/li>\n<li>H. Swaminathan, C. M. Grgicak, M. Medard, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1016\/j.fsigen.2014.11.010\">NOC<em>It<\/em>: A computational method to infer the number of contributors to DNA samples analyzed by STR genotyping<\/a>. <em>Forensic Sci. Int. Genet.<\/em>, 16:172-180, May 2015.<\/li>\n<li>J. J. Kelley, A. Lane, X. Li, B. Mutthoju, S. Maor, D. Egen, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1093\/bioinformatics\/btu685\">MOST: A software environment for constraint-based metabolic modeling and strain design<\/a>. <em>Bioinformatics<\/em>, 31(4):610-611, February 2015.<\/li>\n<li>O. Levitan, J. Dinamarca, E. Zelzion, D. S. Lun, L. T. Guerra, M. K. Kim, J. Kim, B. A. S. Van Mooy, D. Bhattacharya, and P. G. Falkowski. <a href=\"https:\/\/doi.org\/10.1073\/pnas.1419818112\">Remodeling of intermediate metabolism in the diatom <em>Phaeodactylum tricornutum<\/em> under nitrogen stress<\/a>. <em>Proc. Natl. Acad. Sci. USA<\/em>, 112(2):412-417, January 2015.<\/li>\n<li>K. Ip, N. Donoghue, M. K. Kim, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1002\/bit.25261\">Constraint-based modeling of heterologous pathways: Application and experimental demonstration for overproduction of fatty acids in <i>Escherichia coli<\/i><\/a>. <em>Biotechol. Bioeng.<\/em>, 111(10):2056-2066, October 2014.<\/li>\n<li>M. K. Kim and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1016\/j.csbj.2014.08.009\">Methods for integration of transcriptomic data in genome-scale metabolic models<\/a>. <em>Comput. Struct. Biotechnol. J.<\/em>, 11(18):59-65, August 2014.<\/li>\n<li>D. Hong, S. Man, J.-C. Birget, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1239\/jap\/1395771410\">A wavelet-based almost sure uniform approximation of fractional Brownian motion with a parallel algorithm<\/a>. <em>J. Appl. Probab.<\/em>, 51(1):1-18, 2014.<\/li>\n<li>F. Zhao, M. M\u00e9dard, A. Ozdaglar, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1109\/TIT.2013.2287725\">Convergence study of decentralized min-cost subgraph algorithms for multicast in coded networks<\/a>. <em>IEEE Trans. Inform. Theory<\/em>, 60(1):410-421, January 2014.<\/li>\n<li>K. E. Wiens, H. Swaminathan, R. Copin, D. S. Lun, and J. D. Ernst. <a href=\"https:\/\/doi.org\/10.1371\/journal.pone.0073124\">Equivalent T cell epitope promiscuity in ecologically diverse human pathogens<\/a>. <em>PLoS ONE<\/em>, 8(8):e73124, August 2013.<\/li>\n<li>G. P. Bisson, C. Mehaffy, C. Broeckling, J. Prenni, D. Rifat, D. S. Lun, M. Burgos, D. Weissman, P. C. Karakousis, and K. Dobos. <a href=\"https:\/\/doi.org\/10.1128\/JB.01013-12\">Upregulation of the phthiocerol dimycocerosate biosynthetic pathway by rifampicin-resistant, <i>rpoB<\/i>-mutant <i>Mycobacterium tuberculosis<\/i><\/a>. <em>J. Bacteriol.<\/em>, 194(23):6441-6452, December 2012.<\/li>\n<li>D. Egen and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1093\/bioinformatics\/bts255\">Truncated branch and bound achieves efficient constraint-based genetic design<\/a>. <em>Bioinformatics<\/em>, 28(12):1619-1623, June 2012.<\/li>\n<li>A. Brandes, D. S. Lun, K. Ip, J. Zucker, C. Colijn, B. Weiner, and J. E. Galagan. <a href=\"https:\/\/doi.org\/10.1371\/journal.pone.0036947\">Inferring carbon sources from gene expression profiles using metabolic flux models<\/a>. <em>PLoS ONE<\/em>, 7(5):e36947, May 2012.<\/li>\n<li>M. G. Niepielko, K. Ip, J. S. Kanodia, D. S. Lun, and N. Yakoby. <a href=\"https:\/\/doi.org\/10.1016\/j.bpj.2012.03.026\">Evolution of BMP signaling in <em>Drosophila<\/em> oogenesis: A receptor-based mechanism<\/a>. <em>Biophys. J.<\/em>, 102(8):1722-1730, April 2012.<\/li>\n<li>K. Ip, C. Colijn, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1186\/1752-0509-5-91\">Analysis of complex metabolic behavior through pathway decomposition<\/a>. <em>BMC Syst. Biol.<\/em>, 5:91, June 2011.<\/li>\n<li>M. R. Golzarian, R. A. Frick, K. Rajendran, B. Berger, S. Roy, M. Tester, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1186\/1746-4811-7-2\">Accurate inference of shoot biomass from high-throughput images of cereal plants<\/a>. <em>Plant Methods<\/em>, 7:2, February 2011.<\/li>\n<li>A. Eryilmaz, D. S. Lun, and B. T. Swapna. <a href=\"https:\/\/doi.org\/10.1109\/TIT.2010.2095110\">Control of multi-hop communication networks for inter-session network coding<\/a>. <em>IEEE Trans. Inform. Theory<\/em>, 57(2):1092-1110, February 2011.<\/li>\n<li>H. I. M. Boshoff and D. S. Lun. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/boshoff_lun_2010.pdf\">Systems biology approaches to understanding mycobacterial survival mechanisms<\/a>. <em>Drug Discov. Today: Dis. Mech.<\/em>, 7(1):e75-e82, Spring 2010.<\/li>\n<li>X. Shi, D. S. Lun, M. M\u00e9dard, R. K\u00f6tter, J. C. Meldrim, and A. J. Barry. <a href=\"https:\/\/doi.org\/10.1109\/TIT.2009.2037029\">Joint base-calling of two DNA sequences with factor graphs<\/a>. <em>IEEE Trans. Inform. Theory<\/em>, 56(2):724-733, February 2010.<\/li>\n<li>D. S. Lun, A. Sherrid, B. Weiner, D. R. Sherman, and J. E. Galagan. <a href=\"https:\/\/doi.org\/10.1186\/gb-2009-10-12-r142\">A blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-Seq data<\/a>. <em>Genome Biol.<\/em>, 10(12):R142, December 2009.<\/li>\n<li>D. S. Lun, G. Rockwell, N. J. Guido, M. Baym, J. A. Kelner, B. Berger, J. E. Galagan, and G. M. Church. <a href=\"https:\/\/doi.org\/10.1038\/msb.2009.57\">Large-scale identification of genetic design strategies using local search<\/a>. <em>Mol. Syst. Biol.<\/em>, 5:296, August 2009.<\/li>\n<li>C. Colijn, A. Brandes, J. Zucker, D. S. Lun, B. Weiner, M. R. Farhat, T.-Y. Cheng, D. B. Moody, M. Murray, and J. E. Galagan. <a href=\"https:\/\/doi.org\/10.1371\/journal.pcbi.1000489\">Interpreting expression data with metabolic flux models: Predicting <em>Mycobacterium tuberculosis<\/em> mycolic acid production<\/a>. <em>PLoS Comput. Biol.<\/em>, 5(8):e1000489, August 2009.<\/li>\n<li>L. D. Jennings, D. S. Lun, M. M\u00e9dard, and S. Licht. <a href=\"https:\/\/doi.org\/10.1021\/bi801101p\">ClpP hydrolyzes a protein substrate processively in the absence of the ClpA ATPase: Mechanistic studies of ATP-independent processive proteolysis<\/a>. <em>Biochemistry<\/em>, 47(44):11536-11546, November 2008.<\/li>\n<li>J.-S. Park, U. Lee, S. Y. Oh, M. Gerla, D. S. Lun, W. W. Ro, and J. Park. <a href=\"https:\/\/doi.org\/10.1093\/ietisy\/e91-d.10.2524\">Delay analysis of car-to-car reliable data delivery strategies based on data mulling with network coding<\/a>. <em>IEICE Trans. Inf. &amp; Syst.<\/em>, E91-D(10):2524-2527, October 2008.<\/li>\n<li>D. S. Lun, M. M\u00e9dard, R. Koetter, and M. Effros. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/lun_et_al_2008.pdf\">On coding for reliable communication over packet networks<\/a>. <em>Physical Communication<\/em>, 1(1):3-20, March 2008.<\/li>\n<li>D. S. Lun, L. D. Jennings, R. Koetter, S. Licht, and M. M\u00e9dard. <a href=\"https:\/\/doi.org\/10.1021\/ci6005195\">An information-based computational technique for estimation of chromatographic peak purity<\/a>. <em>J. Chem. Inf. Model.<\/em>, 47(5):1973-1978, September 2007.<\/li>\n<li>J.-S. Park, M. Gerla, D. S. Lun, Y. Yi, and M. M\u00e9dard. <a href=\"https:\/\/doi.org\/10.1109\/WC-M.2006.250362\">Codecast: A network-coding based ad hoc multicast protocol<\/a>. <em>IEEE Wireless Commun. Mag.<\/em>, 13(5):76-81, October 2006.<\/li>\n<li>D. S. Lun, N. Ratnakar, M. M\u00e9dard, R. Koetter, D. R. Karger, T. Ho, E. Ahmed, and F. Zhao. <a href=\"https:\/\/doi.org\/10.1109\/TIT.2006.874523\">Minimum-cost multicast over coded packet networks<\/a>. <em>IEEE Trans. Inform. Theory<\/em>, 52(6):2608-2623, June 2006.<\/li>\n<li>D. S. Lun, M. M\u00e9dard, and I. C. Abou-Faycal. <a href=\"https:\/\/doi.org\/10.1109\/TCOMM.2004.829512\">On the performance of peaky capacity-achieving signaling on multipath fading channels<\/a>. <em>IEEE Trans. Commun.<\/em>, 52(6):931-938, June 2004.<\/li>\n<\/ol>\n<h3>Conference papers<\/h3>\n<ol>\n<li>S. Karkar, L. E. Alfonse, C. M. Grgicak, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1109\/BIBM.2018.8621135\">Statistical modeling of short-tandem repeat capillary electrophoresis profiles<\/a>. In <em>Proc. 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2018)<\/em>, pages 869-876, December 2018.<\/li>\n<li>L. E. Alfonse, A. D. Garrett, H. Swaminathan, K. C. Peters, G. Wellner, X. Yearwood-Garcia, L. M. Taranow, J. Sheehan, S. E. Norsworthy, U. M\u00f6nich, D. S. Lun, K. R. Duffy, M. M\u00e9dard, R. W. Cotton, and C. M. Grgicak. <a href=\"https:\/\/www.promega.com\/-\/media\/files\/products-and-services\/genetic-identity\/ishi-27-oral-abstracts\/5-grgicak.pdf\">The development and release of a collection of computational tools and a large-scale empirical data set for validation: The PROVEDIt initiative<\/a>. In <em>Proc. 27th International Symposium on Human Identification<\/em>, September 2016.<\/li>\n<li>H. Swaminathan, C. M. Grgicak, M. Medard, and D. S. Lun. <a href=\"https:\/\/www.promega.com\/~\/media\/files\/resources\/conference%20proceedings\/ishi%2024\/oral%20presentations\/lun-manuscript.pdf\">NOCIt\u2013a computational tool to infer the number of contributors to a forensic DNA sample<\/a>. In <em>Proc. 24th International Symposium on Human Identification<\/em>, October 2013.<\/li>\n<li>J.-C. Birget, D. S. Lun, A. Wirth, and D. Hong. <a href=\"https:\/\/doi.org\/10.1109\/Allerton.2012.6483392\">Identification of binary gene networks<\/a>. In <em>Proc. 50th Annual Allerton Conference on Communication, Control, and Computing<\/em>, pages 1467-1474, October 2012.<\/li>\n<li>J.-C. Birget, D. S. Lun, A. Wirth, and D. Hong. <a href=\"https:\/\/doi.org\/10.1109\/ITW.2012.6404709\">A theoretical approach to gene network identification<\/a>. In <em>Proc. 2012 IEEE Information Theory Workshop (ITW 2012)<\/em>, pages 432-436, September 2012.<\/li>\n<li>D. Traskov, M. Heindlmaier, M. M\u00e9dard, R. Koetter, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1109\/GLOCOMW.2008.ECP.96\">Scheduling for network coded multicast: A conflict graph formulation<\/a>. In <em>Proc. 2008 IEEE Globecom Workshops<\/em>, pages 1-5, November-December 2008.<\/li>\n<li>X. Shi, D. S. Lun, J. Meldrim, R. K\u00f6tter, and M. M\u00e9dard. <a href=\"https:\/\/doi.org\/10.1109\/ICASSP.2008.4518043\">Joint base-calling of two DNA sequences with factor graphs<\/a>. In <em>Proc. 2008 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP 2008)<\/em>, pages 2049-2052, March-April 2008.<\/li>\n<li>F. Zhao, M. M\u00e9dard, D. Lun, and A. Ozdaglar. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/ALLER07_0233_FI.pdf\">Convergence rates of min-cost subgraph algorithms for multicast in coded networks<\/a>. In <em>Proc. 45th Annual Allerton Conference on Communication, Control, and Computing<\/em>, September 2007.<\/li>\n<li>F. Zhao, D. S. Lun, M. M\u00e9dard, and E. Ahmed. <a href=\"https:\/\/doi.org\/10.1109\/ITW.2007.4313120\">Decentralized algorithms for operating coded wireless networks<\/a>. In <em>Proc. 2007 IEEE Information Theory Workshop (ITW 2007)<\/em>, pages 472-477, September 2007.<\/li>\n<li>D. Traskov, D. S. Lun, R. Koetter, and M. M\u00e9dard. <a href=\"https:\/\/doi.org\/10.1109\/ISIT.2007.4557185\">Network coding in wireless networks with random access<\/a>. In <em>Proc. 2007 IEEE International Symposium on Information Theory (ISIT 2007)<\/em>, pages 2726-2730, June 2007.<\/li>\n<li>C. Fragouli, D. S. Lun, M. M\u00e9dard, and P. Pakzad. <a href=\"https:\/\/doi.org\/10.1109\/CISS.2007.4298308\">On feedback for network coding<\/a>. In <em>Proc. 2007 Conference on Information Sciences and Systems (CISS 2007)<\/em>, pages 248&#8211;252, March 2007.<\/li>\n<li>A. Eryilmaz and D. S. Lun. <a href=\"https:\/\/ita.ucsd.edu\/workshop\/07\/files\/paper\/paper_705.pdf\">Control for inter-session network coding<\/a>. In <em>Proc. 2007 Information Theory and Applications Workshop (ITA 2007)<\/em>, January-February 2007.<\/li>\n<li>J.-S. Park, D. S. Lun, F. Soldo, M. Gerla, and M. M\u00e9dard. <a href=\"https:\/\/doi.org\/10.1109\/MILCOM.2006.302320\">Performance of network coding in ad hoc networks<\/a>. In <em>Proc. IEEE Milcom 2006<\/em>, pages 1-6, October 2006.<\/li>\n<li>P. Maymounkov, N. J. A. Harvey, and D. S. Lun. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/maymounkov-allerton2006.pdf\">Methods for efficient network coding<\/a>. In <em>Proc. 44th Annual Allerton Conference on Communication, Control, and Computing<\/em>, September 2006.<\/li>\n<li>J.-S. Park, U. Lee, S. Y. Oh, M. Gerla, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1145\/1161064.1161087\">Emergency related video streaming in VANET using network coding<\/a>. In <em>Proc. 3rd International Workshop on Vehicular Ad Hoc Networks (VANET &#8217;06)<\/em>, pages 102-103, September 2006.<\/li>\n<li>D. Traskov, N. Ratnakar, D. S. Lun, R. Koetter, and M. M\u00e9dard. <a href=\"https:\/\/doi.org\/10.1109\/ISIT.2006.261656\">Network coding for multiple unicasts: An approach based on linear optimization<\/a>. In <em>Proc. 2006 IEEE International Symposium on Information Theory (ISIT 2006)<\/em>, pages 1758-1762, July 2006.<\/li>\n<li>D. S. Lun, P. Pakzad, C. Fragouli, M. M\u00e9dard, and R. Koetter. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/netcod2006.pdf\">An analysis of finite-memory random linear coding on packet streams<\/a>. In <em>Proc. 4th International Symposium on Modeling and Optimization in Mobile, Ad Hoc and Wireless Networks (WiOpt &#8217;06)<\/em>, April 2006.<\/li>\n<li>D. S. Lun, M. M\u00e9dard, and R. Koetter. <a href=\"https:\/\/doi.org\/10.1109\/IZS.2006.1649082\">Network coding for efficient wireless unicast<\/a>. In <em>Proc. 2006 International Zurich Seminar on Communications (IZS 2006)<\/em>, pages 74-77, February 2006.<\/li>\n<li>D. S. Lun, E. Ahmed, L. R. Brothers, J. A. DeBardelaben, M. Effros, T. Ho, D. Karger, R. Koetter, A. Lee, S. J. MacMullan, M. M\u00e9dard, and F. Zhao. <a href=\"https:\/\/doi.org\/10.1117\/12.634898\">Network coding for wireless applications<\/a>. In <em> Proc. SPIE<\/em>, vol. 5986, page 59860U, October 2005.<\/li>\n<li>D. S. Lun, M. M\u00e9dard, R. Koetter, and M. Effros. <a href=\"https:\/\/doi.org\/10.1109\/ISIT.2005.1523665\">Further results on coding for reliable communication over packet networks<\/a>. In <em>Proc. 2005 IEEE International Symposium on Information Theory (ISIT 2005)<\/em>, pages 1848-1852, September 2005.<\/li>\n<li>C. Luo, M. M\u00e9dard, L. Zheng, and D. S. Lun. <a href=\"https:\/\/doi.org\/10.1109\/ISIT.2005.1523303\">Multi-tone FSK with feedback<\/a>. In <em>Proc. 2005 IEEE International Symposium on Information Theory (ISIT 2005)<\/em>, pages 112-116, September 2005.<\/li>\n<li>D. S. Lun, M. M\u00e9dard, and R. Koetter. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/iwct2005.pdf\">Efficient operation of wireless packet networks using network coding<\/a>. In <em>Proc. International Workshop on Convergent Technologies (IWCT) 2005<\/em>, June 2005.<\/li>\n<li>S. Deb, M. Effros, T. Ho, D. R. Karger, R. Koetter, D. S. Lun, M. M\u00e9dard, and N. Ratnakar. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/iwwan2005.pdf\">Network coding for wireless applications: A brief tutorial<\/a>. In <em>Proc. International Workshop on Wireless Ad-hoc Networks (IWWAN) 2005<\/em>, May 2005.<\/li>\n<li>D. S. Lun, M. M\u00e9dard, and D. R. Karger. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/netcod2005_lun.pdf\">On the dynamic multicast problem for coded networks<\/a>. In <em>Proc. WINMEE, RAWNET and NETCOD 2005 workshops<\/em>, April 2005.<\/li>\n<li>D. S. Lun, N. Ratnakar, R. Koetter, M. M\u00e9dard, E. Ahmed, and H. Lee. <a href=\"https:\/\/doi.org\/10.1109\/INFCOM.2005.1498443\">Achieving minimum cost multicast: A decentralized approach based on network coding<\/a>. In <em>Proc. IEEE Infocom 2005<\/em>, volume 3, pages 1607-1617, March 2005. [<a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/infocom2005_errata.pdf\">Errata<\/a>]<\/li>\n<li>D. S. Lun, M. M\u00e9dard, T. Ho, and R. Koetter. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/isita2004.pdf\">Network coding with a cost criterion<\/a>. In <em>Proc. 2004 International Symposium on Information Theory and its Applications (ISITA 2004)<\/em>, October 2004.<\/li>\n<li>D. S. Lun, M. M\u00e9dard, and M. Effros. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/allerton2004.pdf\">On coding for reliable communication over packet networks<\/a>. In <em>Proc. 42nd Annual Allerton Conference on Communication, Control, and Computing<\/em>, September-October 2004.<\/li>\n<li>D. S. Lun and M. M\u00e9dard. <a href=\"https:\/\/doi.org\/10.1109\/ISIT.2004.1365111\">On the sufficiency of power control for a class of channels with feedback<\/a>. In <em>Proc. 2004 IEEE International Symposium on Information Theory (ISIT 2004)<\/em>, page 73, June-July 2004. [<a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/isit2004_extabs.pdf\">Extended version<\/a>]<\/li>\n<li>D. S. Lun, M. M\u00e9dard, and I. C. Abou-Faycal. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/isita2002_2282.pdf\">Error exponents for capacity-achieving signaling on wideband Rayleigh fading channels<\/a>. In <em>Proc. 2002 International Symposium on Information Theory and its Applications (ISITA 2002)<\/em>, October 2002.<\/li>\n<li>D. S. Lun, M. M\u00e9dard, and I. C. Abou-Faycal. <a href=\"https:\/\/doi.org\/10.1109\/VETECF.2002.1040410\">An upper bound on the error probability of capacity-achieving signaling on broadband Rayleigh fading channels<\/a>. In <em>Proc. 56th IEEE Vehicular Technology Conference (VTC 2002-Fall)<\/em>, volume 1, pages 577-581, September 2002.<\/li>\n<li>D. S. Lun, M. M\u00e9dard, and I. C. Abou-Faycal. <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/wp-content\/uploads\/sites\/884\/2022\/09\/ciss2002_final.pdf\">Error exponents for wideband multipath fading channels &#8212; a strong coding theorem<\/a>. In <em>Proc. 2002 Conference on Information Sciences and Systems (CISS 2002)<\/em>, March 2002.<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"<p>Google Scholar Books T. Ho and D. S. Lun. Network Coding: An Introduction. Cambridge University Press, Cambridge, 2008. [Review by Olav Geil] [Chinese translation] [Japanese translation] Book chapters A. Krishnan, &hellip; <a href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/publications\/\" class=\"\">Read More<\/a><\/p>\n","protected":false},"author":21,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"template-custom.php","meta":{"_acf_changed":false,"footnotes":""},"class_list":["post-363","page","type-page","status-publish","hentry"],"acf":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v23.5 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Publications - Desmond Lun<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/sites.rutgers.edu\/desmond-lun\/publications\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications - Desmond Lun\" \/>\n<meta property=\"og:description\" content=\"Google Scholar Books T. 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