Research
We develop and apply computational tools to tackle challenging problems in chemistry and materials science. Our research is highly interdisciplinary, integrating quantum chemistry, machine learning, condensed matter theory, and quantum information. We apply our computational frameworks to discover next-generation renewable energy solutions, addressing the energy crisis and environmental challenges. We also design quantum materials with exotic physical properties, aiming to lay the foundation for the next technological revolution.
Systems We Study
Electronic Structure

Quantum Materials

Quantum information is a transformative technology with the potential to reshape our future. However, major challenges remain, including limited conceptual understanding and the lack of suitable materials for robust quantum computing. Our mission is to design materials with exotic quantum properties—such as topologically protected orders, fracton phases, and many-body localization—to accelerate progress in quantum information science and technology.
New Energy Solution

Sustainable and low-cost energy resources are essential to support the rapid growth of modern technology. As a computational research group, we focus on identifying efficient solutions to meet the increasing computational demands of the HPC and GPU computing era. We use the quantum chemistry and AI platforms developed in our group to accelerate the discovery of new energy materials.
Methods We Develop & Use
Quantum Embedding
Quantum embedding methods are promising tools for scalable chemical simulations. The core idea is to apply different levels of theory to different parts of a system. In materials science, approaches like density matrix embedding theory (DMET, shown in the figure) and dynamical mean-field theory (DMFT) are widely used for their effective treatment of electron correlations. Our group develops embedding methods based on these frameworks to achieve accurate simulations of large solid-state systems.
ML-accelerated quantum chemistry
Quantum chemistry constantly balances accuracy and computational cost. Machine learning offers two powerful solutions. First, pretrained neural networks can replace the most time-consuming components of quantum chemistry methods, significantly reducing cost while preserving accuracy across diverse systems. Second, the expressiveness of neural networks makes them ideal for representing quantum states—so-called neural network quantum states (NNQS)—which map fundamental system information, such as nuclear coordinates, directly to wavefunctions. Our group advances simulation methods in both directions to accelerate progress in chemical research.
Generative AI
Chemistry is the science of creating new substances. However, traditional trial-and-error methods are too slow to keep pace with the vastness of chemical space. Recent advances in data science and artificial intelligence offer a path toward systematic and efficient exploration. Our group develops and applies AI tools, guided by quantum chemistry, to accelerate the discovery of novel functional materials.
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Preprints
(4) Sun, Q., et. al., The Python Simulations of Chemistry Framework: 10 years of an open-source quantum chemistry project. arXiv, 2026, arXiv:2603.14155.
(3) Baker, N. A.; Bilodeau, B.; Chen, C.; Chen, Y.; Eckhoff, M.; Efimovskaya, A.; Gasparotto, P.; van Gerwen, P.; Gong, R.; Hoang, K.; Hooshmand, Z. QDK/Chemistry: A Modular Toolkit for Quantum Chemistry Applications. arXiv 2026, arXiv:2601.15253.
(2) Cheng, A. H.; Sun, C.; Aspuru-Guzik, A. Scalable Autoregressive 3D Molecule Generation. arXiv, 2025, arXiv:2505.13791.
(1) Sun, C. Electron localization in disordered quantum systems at finite temperatures. arXiv, 2024, arXiv:2403.16868.
Peer-reviewed
(15) Giordano, L.; Tan, Y. S.; Cui, Z.-H.; Sun, C. Ab initio quantum embedding at finite temperature with density matrix embedding theory. J. Chem. Phys. 2026, 164 (15), 154102
(14) Schleich, P.; Calderón, L. M.; Sun, C.; Bagherimehrab, M.; Aldossary, A.; Kottmann, J. S.; Aspuru-Guzik, A. Quantum Computing for Quantum Chemistry; American Chemical Society: Washington, DC, 2025.
(13) Thiede, L.; Sun, C.; Aspuru-Guzik, A. Waveflow: Boundary-conditioned normalizing flows applied to fermionic wave functions. APL Mach. Learn. 2024, 2 (4).
(12) Sun, C.; Gao, F.; Scuseria, G. E. Selected Nonorthogonal Configuration Interaction with Compressed Single and Double Excitations. J. Chem. Theory Comput. 2024, 20 (9), 3741–3748.
(11) Gratsea, K.; Sun, C.; Johnson, P. D. Evaluating the efficiency of ground-state-preparation algorithms. Phys. Rev. A 2024, 109 (4), 042425.
(10) Zhai, H.; Larsson, H. R.; Lee, S.; Cui, Z. H.; Zhu, T.; Sun, C.; Peng, L.; Peng, R.; Liao, K.; Tölle, J.; Yang, J.; Li, S.; Chan, G. K. Block2: A comprehensive open source framework to develop and apply state-of-the-art DMRG algorithms in electronic structure and beyond. J. Chem. Phys. 2023, 159 (23).
(9) Kyaw, T. H.; Soley, M. B.; Allen, B.; Bergold, P.; Sun, C.; Batista, V. S.; Aspuru-Guzik, A. Boosting quantum amplitude exponentially in variational quantum algorithms. Quantum Sci. Technol. 2023, 9 (1), 01LT01.
(8) Ren, F.; Ding, X.; Zheng, M.; Korzinkin, M.; Cai, X.; Zhu, W.; Mantsyzov, A.; Aliper, A.; Aladinskiy, V.; Cao, Z.; Kong, S.; Long, X.; Liu, B. H. M.; Liu, Y.; Naumov, V.; Shneyderman, A.; Ozerov, I. V.; Wang, J.; Pun, F. W.; Polykovskiy, D. A.; Sun, C.; Levitt, M.; Aspuru-Guzik, A.; Zhavoronkov, A. AlphaFold accelerates artificial intelligence powered drug discovery: Efficient discovery of a novel CDK20 small molecule inhibitor. Chem. Sci. 2023, 14 (6), 1443–1452.
(7) Krenn, M.; Ai, Q.; Barthel, S.; Carson, N.; Frei, A.; Frey, N. C.; Friederich, P.; Gaudin, T.; Gayle, A. A.; Jablonka, K. M.; Lameiro, R. F.; Lemm, D.; Lo, A.; Moosavi, S. M.; Nápoles-Duarte, J. M.; Nigam, A. K.; Pollice, R.; Rajan, K.; Schatzschneider, U.; Schwaller, P.; Skreta, M.; Smit, B.; Strieth-Kalthoff, F.; Sun, C.; Tom, G.; von Rudorff, G. F.; Wang, A.; White, A. D.; Young, A.; Yu, R.; Aspuru-Guzik, A. SELFIES and the future of molecular string representations. Patterns 2022, 3 (10).
(6) Sun, C. Finite Temperature Simulations of Strongly Correlated Systems; California Institute of Technology: Pasadena, CA, 2021.
(5) Cui, Z. H.; Sun, C.; Ray, U.; Zheng, B. X.; Sun, Q.; Chan, G. K. L. Ground-state phase diagram of the three-band Hubbard model from density matrix embedding theory. Phys. Rev. Res. 2020, 2 (4), 043259.
(4) Sun, Q.; Zhang, X.; Banerjee, S.; Bao, P.; Barbry, M.; Blunt, N. S.; Bogdanov, N. A.; Booth, G. H.; Chen, J.; Cui, Z.-H.; Eriksen, J. J.; Gao, Y.; Guo, S.; Hermann, J.; Hermes, M. R.; Koh, K.; Koval, P.; Lehtola, S.; Li, Z.; Liu, J.; Mardirossian, N.; McClain, J. D.; Motta, M.; Mussard, B.; Pham, H. Q.; Pulkin, A.; Purwanto, W.; Robinson, P. J.; Ronca, E.; Sayfutyarova, E. R.; Scheurer, M.; Schurkus, H. F.; Smith, J. E. T.; Sun, C.; Sun, S.-N.; Upadhyay, S.; Wagner, L. K.; Wang, X.; White, A.; Whitfield, J. D.; Williamson, M. J.; Wouters, S.; Yang, J.; Yu, J. M.; Zhu, T.; Berkelbach, T. C.; Sharma, S.; Sokolov, A. Y.; Chan, G. K. Recent developments in the PySCF program package. J. Chem. Phys. 2020, 153 (2).
(3) Sun, C.; Ray, U.; Cui, Z. H.; Stoudenmire, M.; Ferrero, M.; Chan, G. K. L. Finite-temperature density matrix embedding theory. Phys. Rev. B 2020, 101 (7), 075131.
(2) Motta, M.; Sun, C.; Tan, A. T. K.; O’Rourke, M. J.; Ye, E.; Minnich, A. J.; Brandao, F. G. S. L.; Chan, G. K.-L. Determining eigenstates and thermal states on a quantum computer using quantum imaginary time evolution. Nat. Phys. 2020, 16 (2), 205–210.
(1) Ye, H. Z.; Sun, C.; Jiang, H. Monte-Carlo simulations of spin-crossover phenomena based on a vibronic Ising-like model with realistic parameters. Phys. Chem. Chem. Phys. 2015, 17 (10), 6801–6808.