Resources
Mechanobiology:
Defining Mechanobiology
Single-cell RNAseq analysis courses:
UC Davis Bioinformatics Core Training (R, Bioinformatics, and tutorials) – this is a great primary resource to learn basics of R, bioinformatic and scRNAseq analysis (training courses from Github page)
Monocle 3 scRNAseq analysis including trajectory analysis – they have a great tutorial on how to use this software
Single-cell RNA-seq data analysis workshop
Multiple Topics (microscopy, bioinformatics, etc.) from iBiology.org
-iBiology.org Playlists
Genomic Resources
Genome Browser http://genome.ucsc.edu/
Expasy https://www.expasy.org/
Protein Motif Search http://smart.embl-heidelberg.de/
Primer Design Tool https://www.ncbi.nlm.nih.gov/tools/primer-blast/
Gene Set Enrichment Analysis http://metascape.org/gp/index.html#/main/step1
Embryo Data for Lethal Genes https://www.mousephenotype.org/data/embryo_imaging
Enhancer Atlas http://www.enhanceratlas.org/
CRISPR
Guide RNA design tools https://cm.jefferson.edu/Off-Spotter/
Microscopy
Interactive tool for 3D data visualization FluoRender
NEUBIAS NEUBIAS Academy
FOCAL PLANE Where Biology Meets Microscopy
PIVlab – Digital Particle Image Velocimetry Tool for Matlab
Tissue Clearing
iDisco https://idisco.info/
Miscellaneous
Mechanobiology https://www.mechanobio.info/
Fluorescent Protein Database https://www.fpbase.org/
North American Vascular Biology Organization https://www.navbo.org/