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Different types of media are used to cultivate different types of organisms or perform different types of assays. While there are countless types of media out there, the ones most commonly used in the White Lab are listed below.



How to make media

There are two types of media out there: agars and broths. Agar media requires heat to fully go into solution and will become solid when cooled. Broths do not require any heat and will stay liquid no matter the temperature.

To make media, first gather all your required ingredients, including reagents, weigh dishes, scoops, and bottles. Reagents are kept in alphabetical order on the media shelf. Weigh dishes, paper, scoops, magnetic stir bars and stir bar retrievers are kept in the drawer below the scale. Typically, we use screw cap bottles that are 1000 ml or less, but we also have various sized Erlenmeyer flasks available. Bottles and flasks should only be filled to a max of half the total capacity (e.g., a 1000 ml bottle should only have 500 ml worth of media inside it), as the media will boil during the heating and autoclaving processes.

Weigh out your reagents and pour them into the bottle/flask. Add the necessary amount of distilled water into the bottle/flask and swirl to get as many reagents into solution as possible. Broths can be autoclaved after this step, but agars must be melted into solution first.

Media can be melted into solution using the hot plate or using the microwave. In both cases, melt any agar-based media fully into solution prior to autoclaving. To determine if the media is fully melted, hold the bottle up to the light and look through it for any small clear blobs or distortions floating around in the solution. It helps to gently swirl the bottle first to agitate any unmelted agar but not so fast that bubbles develop.

Using a hot plate

Hot plates are slower to heat up but do get very hot.

Before starting:

  • You will need to add a stir bar.
    • If you are using a screw cap media bottle, use a small stir bar to compensate for the indention cavity at the bottom of the bottle. A medium or large bar will continuously bang into the bottle, resulting in less efficient stirring and a large amount of noise.
    • If you are using an Erlenmeyer flask use the bar you feel is most appropriate for its size.
  • Make sure pressure can escape your vessel while minimizing water loss
    • If you are using a screw cap bottle, make sure your lid is loose enough to freely jiggle.
    • If you are using an Erlenmeyer flask, set a glass funnel in the opening to allow pressure to escape and to prevent water loss.

While using:

  • Do not start at the highest setting.
  • Keep a close eye on media with sugar to avoid caramelization at the bottom heat at lower temperatures to start.
    • Each hot plate is from a different manufacture so exact settings will not be the same for each unit but I suggest not going over heat setting 6 on any of them.
  • Avoid allowing the media to boil.
  • Once melted into solution remove the funnel and/or stir bar then cover with aluminum foil.

CAUTION:

  • Never leave hot plates unattended. If you need to step away, even for a moment, turn the heat off but keep stirring.
  • Should media boil and spill, clean up as soon as possible.
Using the microwave

Before starting:

  • Make sure there is a paper towel in the microwave to catch any accidental drips or spills.
  • Make sure pressure can escape your vessel while minimizing water loss
    • If you are using a screw cap bottle, make sure your lid is loose enough to freely jiggle.
    • If you are using an Erlenmeyer flask, set a glass funnel in the opening to allow pressure to escape and to prevent water loss.

While using:

  • Larger screw cap bottles
    • Need to be set at an angle.
      • Inside the roof of the microwave is a slanted lip. Lean the bottle so that the loose cap is flat against this slant. If your cap is not loose enough, you risk a seal developing as the media heats due to reagents on the rim of the bottle making contact with steam.
    • Heat time and boiling points depends on the type of media you are making. Typically, 500 ml of media is first heated for about 2 min and 30 sec. Bottle will be hot!
    • Use pot holder or heat resistant gloves and remove the bottle. Swirl to mix clumps of media and unmelted agar / agarose.
    • Heat again in the microwave for 1 min and 30 sec.
    • Swirl again. You should notice the media is probably halfway melted into solution but it is still cloudy with unmelted agar / agarose.
    • From here on out, heat for 45 seconds or less, remove and swirl gently to mix for about a minute each time.
  • Smaller screw cap bottles
    • Do not need to be kept at angles.
    • Will begin to boil in less time.
    • Follow same protocol as larger bottles, but for less time.
  • Avoid allowing the media to boil.

CAUTION:

  • Avoid boiling the media – you risk losing some media from over boiling and increase the hazard of sudden boiling when moving the bottle or swirling the media.


Usage:
  • This 10% mixture of yeast extract and sucrose is good for growing yeast, fungi and bacteria.
  • NOTE: Some bacterial species, such as Pantoea, will become very liquidy and runny (like an uncooked egg) on this media.
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
    • If using a hot plate, you may want to add sucrose after the agar has been melted to avoid caramelizing the sugar.
Ingredients:

Yeast extract
5 g
Sucrose
5 g
Bacto-agar
7.5g
DI water
500 mL


Usage:
  • This 0.1% mixture of yeast extract and sucrose is good for finicky yeast isolates that need to be streaked frequently.
  • Used to reduce the frequency of subculturing (slows the growth of isolates streaked on it)
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
    • If using a hot plate, you may want to add sucrose after the agar has been melted to avoid caramelizing the sugar.
Ingredients:

Yeast extract
0.5 g
Sucrose
0.5 g
Bacto-agar
7.5 g
DI water
500 mL


Usage:
  • This 10% diluted TSA is great for slowing the growth of bacteria and some fungi.
  • Used to reduce the frequency of subculturing (slows the growth of isolates streaked on it)
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
Ingredients:

TSA (commercially sold)
2 g
Bacto-agar
5 g
DI water
500 mL


Usage:
  • A low-sugar medium used to cultivate and propagate fungi.
  • NOTE: While this media can be stable at room temperature, it is advised to keep it below 8°C to extend its shelf life.
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
Ingredients:

Malt extract
5 g
Yeast Extract
1 g
Bacto-agar
7.5 g
DI water
500 mL


Usage:
  • Tests for protease activity
    • The media is normally cloudy/opaque, but will turn clear around the microbe if it displays protease activity
  • NOTE: Requires 2 separate containers that must be autoclaved separately, then mixed before plating.
Instructions:
  • Agar bottle: Combine all other ingredients and melt agar into solution before autoclaving.
  • Skim milk solution: Stir milk powder into solution (make sure there are no lumps) before autoclaving.
  • Once out of the autoclave, let the agar cool down slightly before mixing in the skim milk solution. Make sure the final solution is evenly mixed before plating.
Ingredients (agar bottle):

Pancreatic digest of casein
2.5 g
Yeast extract
1.25 g
Sucrose
0.5 g
Bacto-agar
7.5 g
DI water
500 mL

Ingredients (skim milk solution):

Low fat dry milk powder
7 g
DI water
50 mL


Usage:
  • A nitrogen-free medium used to detect and cultivate nitrogen-fixing bacteria.
    • Non-nitrogen-fixing bacteria will not grow on this medium.
  • NOTE: This media is opaque, as calcium carbonate is insoluble. Swirl frequently while plating to suspend calcium carbonate.
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
    • Media will not turn transparent after heating, use your judgment to determine when agar is melted.
Ingredients:

Sucrose
10 g
Calcium carbonate (CaCO3)
1 g
Dipotassium phosphate (K2HPO4)
0.5 g
Magnesium sulfate (MgSO4)
0.25 g
Sodium chloride (NaCl)
0.25 g
Ferrous sulfate (FeSO4)
0.05 g
Sodium molybdate (Na2MoO4)
0.0025 g
Bacto-agar
7.5 g
DI water
500 mL


Usage:
  • Tests for phosphate solubilization.
    • The media is normally cloudy/opaque, but will turn clear around the microbe if it can solubilize phosphate.
  • NOTE: This media is opaque, as calcium phosphate is insoluble. Swirl frequently while plating to suspend calcium phosphate.
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
    • Media will not turn transparent after heating, use your judgment to determine when agar is melted.
Ingredients:

Dextrose
5 g
Yeast extract
0.25 g
Calcium phosphate (Ca3(PO4))2
2.5 g
Ammonium sulfate (K2HPO4)
0.25 g
Potassium chloride (KCl)
0.1 g
Magnesium sulfate (MgSO4)
0.05 g
Manganese sulfate (MnSO4)
0.00005 g
Ferrous sulfate (FeSO4)
0.00005 g
Bacto-agar
7.5 g
DI water
500 mL


Usage:
  • Excellent media for isolating fungi that is mixed with bacteria.
  • Made with three different antibiotics to kill just about any bacteria.
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
  • After autoclaving, allow the medium to cool and add the following antibiotics:
    • Rifampicin (0.075 g)
    • Tetracycline (0.075 g)
    • Spectinomycin (0.075 g)
Ingredients:

PDA (commercially sold)
19.5 g
DI water
500 mL


Usage:
  • Excellent media for isolating fungi from soil.
  • Made with chloramphenicol, a broad-spectrum antibiotic that will inhibit the vast majority of bacteria (but you may still find some that are resistant).
  • Will also slow the growth of fungi, making it a little easier to get cleaner subcultures.
Instructions:
  • Highly recommended adding the Rose Bengal over the sink just before heating to make clean-up easier (it is amazing how easy this powder ends up everywhere!)
  • Combine ingredients and melt agar into solution before autoclaving.
    • If using a hot plate, you may want to add dextrose after the agar has been melted to avoid caramelizing the sugar.
  • After autoclaving, allow the medium to cool and add the following antibiotics:
    • Chloramphenicol (0.05 g)
Ingredients:

Dextrose
5 g
Soy peptone
2.5 g
Monopotassium phosphate (KH2PO2)
0.5 g
Magnesium sulfate (MgSO4)
0.25 g
Rose Bengal Powder
0.025 g
Bacto-agar
7.5 g
DI water
500 mL


Usage:
  • A low-nutrient medium that encourages fungi to sporulate.
  • NOTE: This media is opaque, as oatmeal particles are insoluble. Swirl frequently while plating to suspend oatmeal particles.
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
    • Media will not turn transparent after heating, use your judgment to determine when agar is melted.
Ingredients:

OMA (commercially sold)
30 g
DI water
500 mL


Usage:
  • Phytagel is used as a solidifier with any of the Murashige and Skoog (MS) salts when long-term plant survival is needed.
    • For grasses, use MS + Fe as most require iron supplementation for longer running experiments.
  • NOTE: Phytagel will not solidify without mineralization but will resist melting when MS salts are added too soon.
Instructions:
  • Combine Phytagel and DI water.
  • Heat with stirring to get Phytagel into solution before adding MS salts.
Ingredients:

Phytagel
1.25 g (firmer media) OR 1.1 g (softer media)
MS + Fe
2 g
DI water
500 mL


Usage:
  • Used when control of nutrition treatments is required
  • NOTE: The listed amount of MS (2.165g) is for full-strength (100%) MS. Lower concentrations (e.g. 50%) may be more optimal for many species.
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
    • Agarose does not experience the same issue with MS salts as Phytagel.
    • NOTE: use of MS agar for tissue culture may require addition of sucrose.
Ingredients:

MS basal salts (M524)
2.165 g (for 100%)
Agarose
3.5 g
DI water
500 mL


Usage:
  • Used for the isolation of fungi from soil and plant tissues.
  • NOTE: Soil and plant tissue samples must be prepped prior to adding to medium. Prep methods change based on type of sample.
Instructions:
  • Combine ingredients and melt agar into solution before autoclaving.
  • After autoclaving, allow the medium to cool and add the following antibiotics:
    • Chlortetracycline (0.025 g)
    • Streptomycin (0.025 g)
    • Cyclosporin (0.002-0.004 g)
Ingredients:

L-sorbose
2 g
Yeast Extract
0.25 g
Bacto-agar
10 g
DI water
500 mL